Cheesy Baked Butternut Squash Mac and Cheese

Cheesy Baked Butternut Squash Mac and Cheese is not just another comfort food; it’s a delightful amalgamation of creamy, cheesy goodness with the subtle sweetness of roasted butternut squash. This dish offers all the familiar flavors of traditional mac and cheese but kicks it up a notch with the addition of the rich, velvety squash puree that perfectly complements the sharpness of cheddar and the nuttiness of Gruyere. The topping adds an inviting crunch that contrasts beautifully with the soft, cheesy pasta beneath.

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Cheesy Baked Butternut Squash Mac and Cheese

I first stumbled upon this recipe during a chilly fall evening when I was craving something warm and comforting. The thought of indulging in a bowl of mac and cheese was appeasing, but I wanted to add a bit of seasonal flair. What I found was a crowd-pleasing dish that seamlessly combines nutrition and indulgence. Not to mention, it’s downright easy to whip up! Whether you’re hosting a cozy fall gathering or just looking to please your family with something extraordinary, this cheesy baked butternut squash mac and cheese is sure to hit the spot.

Why You’ll Love This Recipe

  • Simple & Quick: It takes only 20 minutes of prep with a total cook time of about 80 minutes.
  • Irresistible Flavor: A creamy blend of cheddar, Gruyere, and roasted squash creates a delightful taste experience.
  • Eye-Catching Appeal: The golden crust of panko breadcrumbs makes this dish an impressive centerpiece.
  • Flexible Serving: Perfect as a main dish for dinner or a comforting side for gatherings.
  • Diet-Friendly Options: Easily adaptable for dairy-free diets by replacing cheese with vegan alternatives.
Cheesy Baked Butternut Squash Mac and Cheese

Ingredients You’ll Need

  • 1 large butternut squash: This provides the rich base for the sauce. Look for one with smooth, blemish-free skin for the best flavor and texture.
  • 2 shallots, roughly chopped (⅔ cup): Adds a hint of sweetness and depth. You can substitute with yellow onion if necessary.
  • 1 pound shell pasta: Shells or elbow macaroni hold onto the cheesy sauce beautifully for maximum flavor in every bite.
  • ¼ cup extra-virgin olive oil: This enriches the squash and enhances the flavors. Use high-quality oil for best results.
  • 2 teaspoons balsamic vinegar: A splash enhances the sweetness of the squash; however, you can use apple cider vinegar as a substitute.
  • 1½ teaspoons sea salt: Balances all the flavors. Adjust to taste based on your preference.
  • 1 teaspoon onion powder: Provides a nice onion flavor without being overpowering.
  • ½ teaspoon garlic powder: Adds a warm, savory note. Fresh garlic could also work, but adjust the quantity.
  • ½ teaspoon ground sage: Complements the squash beautifully, bringing a hint of earthiness.
  • ¼ teaspoon nutmeg: Just a pinch enhances the overall flavor profile, adding warmth without dominating the dish.
  • Freshly ground black pepper: A staple to taste; it adds a bit of spice and richness.
  • 1½ cups unsweetened almond milk: Used to make the cheese sauce creamy. Unsweetened regular milk can work too.
  • 6 ounces grated sharp cheddar cheese (about 2½ cups): Provides the heartiness and classic flavor; you could also try a mild cheddar for less tang.
  • 6 ounces grated Gruyere cheese (about 2½ cups): Known for its nutty taste; it melts beautifully and adds depth.
  • 1½ ounces finely grated pecorino cheese (½ cup): Adds a salty punch, but finely grated Parmesan can be a suitable alternative.
  • ¾ cup panko breadcrumbs: Creates a crispy topping; you can use regular breadcrumbs if necessary.
  • 1½ teaspoons extra-virgin olive oil: For mixing with breadcrumbs to achieve that golden crust.

How to Make Cheesy Baked Butternut Squash Mac and Cheese

Preheat Oven & Prepare Dish: Begin by preheating the oven to 425°F. Line a baking sheet with parchment paper and grease a 9×13-inch baking dish, ensuring everything is ready for baking later.

Roast the Squash: Carefully slice the butternut squash in half lengthwise and scoop out the seeds. Drizzle the cut sides with extra-virgin olive oil, then sprinkle with sea salt and freshly ground black pepper. Place the squash cut side down on the baking sheet. For the shallots, wrap them in a piece of foil, drizzle with olive oil, and sprinkle with salt before sealing tightly. Add the shallots to the baking sheet alongside the squash and roast for 30 to 45 minutes, or until the squash feels soft.

Make the Topping: While the squash is roasting, prepare the crispy topping. In a small bowl, combine the panko breadcrumbs with 1½ teaspoons of olive oil. Toss until well mixed, then set it aside; you want it to soak up the oil for that delightful crunch.

Cook the Pasta: Next, bring a large pot of salted water to a rolling boil. Once boiling, add the shell pasta and cook according to the package instructions until al dente. Be sure to reserve 1½ cups of the starchy pasta water before draining the other liquid.

Blend the Sauce: Measure out 2 cups of the soft roasted squash flesh and transfer it to a blender. Add the reserved pasta water, roasted shallots, ¼ cup of olive oil, 2 teaspoons of balsamic vinegar, sea salt, onion powder, garlic powder, sage, nutmeg, and several grinds of black pepper. Blend until the mixture is creamy and smooth, resembling a delightful sauce.

Heat & Add Cheese: Return the empty pasta pot to the stove and pour in 1½ cups of unsweetened almond milk over medium heat. Stir in the creamy squash sauce and allow it to cook, stirring often, for about 3 minutes until warmed through. Gradually whisk in the grated sharp cheddar, Gruyere, and finely grated pecorino cheese, ensuring each addition melts completely before adding the next for a perfectly blended sauce.

Combine Pasta & Sauce: Once all the cheese is melted and the sauce is rich and creamy, add the cooked pasta to the pot, stirring gently until all the pasta is coated in that luscious cheese mixture.

Broil & Garnish: Preheat your oven’s broiler. Transfer the pasta and cheese mixture into the prepared baking dish, spreading it out evenly. Sprinkle the olive oil-coated panko breadcrumbs over the top, creating a lovely layer that will crisp up under the broiler. Broil for 5 to 10 minutes, watching closely until the panko is golden brown and crunchy on the surface.

Rest Before Serving: Once it’s beautifully browned, remove it from the oven and let it stand for about 15 minutes. This will allow the flavors to marry and the dish to set a bit before serving.

Cheesy Baked Butternut Squash Mac and Cheese

Storing & Reheating

To store any leftovers, allow the mac and cheese to cool completely before transferring it to an airtight container. It can be kept at room temperature for up to 2 hours, in the refrigerator for 3 to 5 days. If you plan to freeze it, use a freezer-safe container and enjoy it within 3 months. For reheating, simply thaw in the refrigerator overnight, then warm in the oven at 350°F for about 20 minutes, or until heated through. You might notice a slight change in texture, but a splash of milk can help refresh the creaminess!

Chef’s Helpful Tips

  • Avoid overcooking the pasta; it should be slightly firm before combining it with the sauce to prevent mushiness.
  • Ensure all cheese is at room temperature to help it melt smoothly into the sauce—no one likes clumpy cheese sauce!
  • To keep that crispy topping, broil last; if it’s done too early, it may lose its crunch when reheating.
  • Feeling adventurous? Adding a bit of smoked paprika or cayenne can elevate the dish with an unexpected kick.
  • This dish can be made ahead. Simply complete all steps except the broiling, refrigerate, and then broil just before serving for a freshly baked taste.

The combination of cheesy goodness and the natural sweetness of butternut squash makes this dish a true winner! It’s comfort in a bowl, perfect for autumn evenings or whenever you crave cozy flavors. Each bite delivers satisfaction, and it’s easy to share your love for this recipe with friends and family. Give it a try—your taste buds will thank you!

Recipe FAQs

Can I make this recipe gluten-free?

Absolutely! Simply substitute the shell pasta with gluten-free pasta, and ensure that your breadcrumbs are also gluten-free. This makes it accessible for those with dietary restrictions without sacrificing flavor.

How can I make this mac and cheese vegan?

To make this dish vegan, use vegan cheese alternatives and replace the almond milk with a plant-based milk like soy or oat milk. You can either omit the cheese topping or use a vegan cheese for the topping as well.

Can I add more vegetables to this dish?

Definitely! Feel free to incorporate other veggies like spinach, kale, or even caramelized onions for added nutrition and flavor. Just sauté them until tender before mixing them into the mac and cheese mixture.

What’s the best way to reheat leftovers?

For the best results, reheat in the oven at 350°F for about 20 minutes, covered with foil to retain moisture. If reheating in the microwave, add a splash of almond milk to help maintain creaminess.

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Cheesy-Baked-Butternut-Squash-Mac-and-Cheese-Recipe

Cheesy Baked Butternut Squash Mac and Cheese

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  • Author: Anna
  • Prep Time: 20 minutes
  • Cook Time: 80 minutes
  • Total Time: 1 hour 40 minutes
  • Yield: 8 servings 1x
  • Category: Main Dishes
  • Method: Baking
  • Cuisine: American

Description

This Cheesy Baked Butternut Squash Mac and Cheese is a comforting dish featuring creamy cheese, roasted butternut squash, and shell pasta that’s perfect for a cozy meal. With simple preparation and mouthwatering flavor, it’s a go-to for a crowd-pleasing dinner.


Ingredients

Scale
  • 1 large butternut squash
  • 2 shallots, roughly chopped (⅔ cup)
  • 1 pound shell pasta, or pipe rigate or elbows*
  • ¼ cup extra-virgin olive oil, plus more for drizzling
  • 2 teaspoons balsamic vinegar
  • 1½ teaspoons sea salt
  • 1 teaspoon onion powder
  • ½ teaspoon garlic powder
  • ½ teaspoon ground sage
  • ¼ teaspoon nutmeg
  • freshly ground black pepper
  • 1½ cups unsweetened almond milk
  • 6 ounces grated sharp cheddar cheese, about 2½ cups
  • 6 ounces grated gruyere cheese, about 2½ cups
  • 1½ ounces finely grated pecorino cheese, ½ cup
  • ¾ cup panko breadcrumbs*
  • 1½ teaspoons extra-virgin olive oil

Instructions

  • Preheat the oven to 425°F, line a baking sheet with parchment paper, and grease a 9×13-inch baking dish.
  • Slice the squash in half lengthwise, scoop out the seeds, drizzle with olive oil, and sprinkle with salt and pepper. Place cut side down on the baking sheet. Wrap shallots in foil with olive oil and salt and place alongside the squash, roasting for 30 to 45 minutes until soft.
  • To make the topping, mix panko with olive oil in a small bowl.
  • Boil salted water in a large pot. Cook the pasta according to the package instructions until al dente, reserving 1½ cups of pasta water before draining.
  • In a blender, combine 2 cups of cooked squash flesh with the reserved pasta water, roasted shallots, olive oil, balsamic vinegar, salt, onion powder, garlic powder, sage, nutmeg, and pepper. Blend until smooth.
  • In the pasta pot, heat almond milk over medium heat. Stir in the squash mixture and cook for 3 minutes. Gradually whisk in cheddar, Gruyere, and pecorino cheeses until melted and creamy. Add pasta and mix until coated.
  • Broil pasta in the prepared baking dish, topped with panko, for 5 to 10 minutes until golden and crisp.
  • Allow to rest for 15 minutes before serving.

Notes

For extra flavor, feel free to add herbs such as thyme or rosemary to the squash before roasting.
Make sure to reserve enough pasta water to achieve the desired creamy consistency in the sauce.


Nutrition

  • Serving Size: 1 cup
  • Calories: 450
  • Sugar: 5g
  • Sodium: 900mg
  • Fat: 18g
  • Saturated Fat: 5g
  • Unsaturated Fat: 11g
  • Trans Fat: 0g
  • Carbohydrates: 60g
  • Fiber: 4g
  • Protein: 15g
  • Cholesterol: 20mg

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